2005. pIQPNNI: Parallel reconstruction of substantial highest chance phylogenies. 2006. Large most probability trees. TipDate is described in a paper: Rambaut, A. 2000. Estimating the amount of molecular evolution: incorporating non-contemporaneous sequences into optimum likelihood phylogenies. The application can also return the likelihood for the uncomplicated molecular clock design (i.e., assuming that all sequences are…
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